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Mouse Atlas of Gene Expression Libraries grouped by Tissue Location

Primary Tissue Location Secondary Tissue Location Library
Embryonic stem cells Whole
Total Tags: 87,194
Location: Embryonic stem cells - Whole
Stage: Embronyonic Stem Cell
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 38,973
Location: Embryonic stem cells - Whole
Stage: Embronyonic Stem Cell
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 46,159
Location: Embryonic stem cells - Whole
Stage: Embronyonic Stem Cell
Protocol: SAGE (LongSAGE 21 bp)
Embryo Fertilized eggs
Total Tags: 111,136
Location: Embryo - Fertilized eggs
Stage: 1 Cell - Theiler Stage 1
Protocol: SAGELite (LongSAGE 21 bp)
Embryo Morulae
Total Tags: 105,576
Location: Embryo - Morulae
Stage: Morula - Theiler Stage 3
Protocol: SAGELite (LongSAGE 21 bp)
Embryo Blastocysts
Total Tags: 91,437
Location: Embryo - Blastocysts
Stage: Blastocyst - Theiler Stage 5
Protocol: SAGELite (LongSAGE 21 bp)
Embryo Whole
Total Tags: 60,276
Location: Embryo - Whole
Stage: Theiler Stage 7
Protocol: SAGE (LongSAGE 21 bp)
Embryo Extraembryonic
Total Tags: 115,957
Location: Embryo - Extraembryonic
Stage: Theiler Stage 10
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 92,727
Location: Embryo - Extraembryonic
Stage: Theiler Stage 8
Protocol: SAGE (LongSAGE 21 bp)
Embryo Embryonic
Total Tags: 111,122
Location: Embryo - Embryonic
Stage: Theiler Stage 10
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 104,441
Location: Embryo - Embryonic
Stage: Theiler Stage 8
Protocol: SAGE (LongSAGE 21 bp)
Embryo Posterior
Total Tags: 103,156
Location: Embryo - Posterior
Stage: Theiler Stage 11
Protocol: SAGE (LongSAGE 21 bp)
Embryo Anterior half
Total Tags: 123,179
Location: Embryo - Anterior half
Stage: Theiler Stage 11
Protocol: SAGE (LongSAGE 21 bp)
Endoderm Foregut
Total Tags: 102,995
Location: Endoderm - Foregut
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Endoderm Hindgut
Total Tags: 110,563
Location: Endoderm - Hindgut
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Endoderm Definitive
Total Tags: 108,599
Location: Endoderm - Definitive
Stage: Theiler Stage 12
Protocol: SAGE (LongSAGE 21 bp)
Neural tube Anterior neuropore
Total Tags: 103,652
Location: Neural tube - Anterior neuropore
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Neural tube Posterior neuropore
Total Tags: 102,336
Location: Neural tube - Posterior neuropore
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Neural tube Whole
Total Tags: 97,410
Location: Neural tube - Whole
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Adrenal glands Whole
Total Tags: 137,830
Location: Adrenal glands
Stage: 12 weeks post birth
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 99,949
Location: Adrenal glands
Stage: Theiler Stage 22
Protocol: SAGE (LongSAGE 21 bp)
Bladder Whole
Total Tags: 137,236
Location: Bladder - Whole
Stage: 12 weeks post birth
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 150,305
Location: Bladder - Whole
Stage: Theiler Stage 22
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 82,158
Location: Bladder - Whole
Stage: Theiler Stage 24
Protocol: SAGE (LongSAGE 21 bp)
Bone Whole
Total Tags: 64,927
Location: Bone
Stage: 12 weeks post birth
Protocol: SAGE (LongSAGE 21 bp)
Brain Amygdala
Total Tags: 103,910
Location: Brain - Amygdala
Stage: Post natal day 7
Protocol: SAGELite (LongSAGE 21 bp)
Brain Amygdala, basolateral complex
Total Tags: 104,401
Location: Brain - Amygdala, basolateral complex
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 109,811
Location: Brain - Amygdala, basolateral complex
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Amygdala, central nucleus
Total Tags: 100,126
Location: Brain - Amygdala, central nucleus
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 110,072
Location: Brain - Amygdala, central nucleus
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Basal nucleus of meynert
Total Tags: 121,027
Location: Brain - Basal nucleus of meynert
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain CA1, dorsal/anterior
Total Tags: 118,219
Location: Brain - CA1, dorsal/anterior
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 110,526
Location: Brain - CA1, dorsal/anterior
Stage: Post natal day 7
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,538
Location: Brain - CA1, dorsal/anterior
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Brain Cerebellum white matter
Total Tags: 107,370
Location: Brain - Cerebellum white matter
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Cerebellum, purkinje cell layer
Total Tags: 104,920
Location: Brain - Cerebellum, purkinje cell layer
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Dentate gyrus, dorsal/anterior
Total Tags: 104,336
Location: Brain - Dentate gyrus, dorsal/anterior
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 100,852
Location: Brain - Dentate gyrus, dorsal/anterior
Stage: Post natal day 7
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 102,173
Location: Brain - Dentate gyrus, dorsal/anterior
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Brain Diencephalon
Total Tags: 113,907
Location: Brain - Diencephalon
Stage: Theiler Stage 19
Protocol: SAGELite (LongSAGE 21 bp)
Brain Dorsal telencephalon
Total Tags: 103,249
Location: Brain - Dorsal telencephalon
Stage: Theiler Stage 17
Protocol: SAGELite (LongSAGE 21 bp)
Brain Dorsal thalamus
Total Tags: 115,961
Location: Brain - Dorsal thalamus
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Brain Ependymal and subependymal layers
Total Tags: 107,054
Location: Brain - Ependymal and subependymal layers
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Epithalamus
Total Tags: 115,152
Location: Brain - Epithalamus
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Brain Future forebrain
Total Tags: 120,113
Location: Brain - Future forebrain
Stage: Theiler Stage 13
Protocol: SAGELite (LongSAGE 21 bp)
Brain Hypothalamus
Total Tags: 132,890
Location: Brain - Hypothalamus
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,936
Location: Brain - Hypothalamus
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Locus coeruleus
Total Tags: 102,956
Location: Brain - Locus coeruleus
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Medial thalamus
Total Tags: 105,407
Location: Brain - Medial thalamus
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Optic cup
Total Tags: 138,115
Location: Brain - Optic cup
Stage: Theiler Stage 17
Protocol: SAGE (LongSAGE 21 bp)
Brain Preplate
Total Tags: 110,082
Location: Brain - Preplate
Stage: Theiler Stage 21
Protocol: SAGELite (LongSAGE 21 bp)
Brain Prestriatum
Total Tags: 147,906
Location: Brain - Prestriatum
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Brain Primary motor cortex
Total Tags: 115,265
Location: Brain - Primary motor cortex
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Rahpe nuclei
Total Tags: 105,732
Location: Brain - Rahpe nuclei
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Striatum
Total Tags: 121,321
Location: Brain - Striatum
Stage: Theiler Stage 25
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 105,204
Location: Brain - Striatum
Stage: Post natal day 7
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 106,605
Location: Brain - Striatum
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 105,535
Location: Brain - Striatum
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Substantia nigra
Total Tags: 117,651
Location: Brain - Substantia nigra
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Ventral telencephalon
Total Tags: 104,861
Location: Brain - Ventral telencephalon
Stage: Theiler Stage 17
Protocol: SAGELite (LongSAGE 21 bp)
Brain Ventral thalamus
Total Tags: 105,708
Location: Brain - Ventral thalamus
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain Visual cortex
Total Tags: 137,463
Location: Brain - Visual cortex
Stage: Post natal day 27
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 109,054
Location: Brain - Visual cortex
Stage: Post natal day 27
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 115,782
Location: Brain - Visual cortex
Stage: Post natal day 27
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 107,380
Location: Brain - Visual cortex
Stage: Post natal day 42
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 124,900
Location: Brain - Visual cortex
Stage: 12 weeks post birth
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 152,702
Location: Brain - Visual cortex
Stage: Post natal day 20
Protocol: SAGE (LongSAGE 21 bp)
Brain Visual cortex layers II/III/IV
Total Tags: 136,072
Location: Brain - Visual cortex layers II/III/IV
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Brain VZ/SVZ dorsal telencephalon
Total Tags: 117,767
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 105,225
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 21
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 110,030
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 21
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 105,529
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 25
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,172
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 25
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 117,924
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 23
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,267
Location: Brain - VZ/SVZ dorsal telencephalon
Stage: Theiler Stage 23
Protocol: SAGELite (LongSAGE 21 bp)
Brain VZ/SVZ ventral telencephalon
Total Tags: 106,807
Location: Brain - VZ/SVZ ventral telencephalon
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Brain Whole
Total Tags: 111,682
Location: Brain - Whole
Stage: Post natal day 27
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,485
Location: Brain - Whole
Stage: 12 weeks post birth
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 102,866
Location: Brain - Whole
Stage: Theiler Stage 25
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 102,141
Location: Brain - Whole
Stage: Post natal day 35
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 106,665
Location: Brain - Whole
Stage: Post natal day 7
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,997
Location: Brain - Whole
Stage: Theiler Stage 20
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 104,460
Location: Brain - Whole
Stage: Theiler Stage 21
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 108,082
Location: Brain - Whole
Stage: Theiler Stage 23
Protocol: SAGELite (LongSAGE 21 bp)
Brain Whole head
Total Tags: 110,057
Location: Brain - Whole head
Stage: Theiler Stage 13
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 126,815
Location: Brain - Whole head
Stage: Theiler Stage 17
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 107,642
Location: Brain - Whole head
Stage: Theiler Stage 15
Protocol: SAGELite (LongSAGE 21 bp)
Total Tags: 109,537
Location: Brain - Whole head
Stage: Theiler Stage 19
Protocol: SAGELite (LongSAGE 21 bp)
Brain Whole telencephalon
Total Tags: 117,979
Location: Brain - Whole telencephalon
Stage: Theiler Stage 15
Protocol: SAGELite (LongSAGE 21 bp)
Branchial arch Branchial arch 1
Total Tags: 136,273
Location: Branchial arch - Branchial arch 1
Stage: Theiler Stage 17
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 91,534
Location: Branchial arch - Branchial arch 1
Stage: Theiler Stage 15
Protocol: SAGE (LongSAGE 21 bp)
Branchial arch Branchial arch 2
Total Tags: 115,196
Location: Branchial arch - Branchial arch 2
Stage: Theiler Stage 17
Protocol: SAGE (LongSAGE 21 bp)
Esophagus Whole
Total Tags: 104,469
Location: Esophagus - Whole
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 107,509
Location: Esophagus - Whole
Stage: Theiler Stage 24
Protocol: SAGE (LongSAGE 21 bp)
Heart Atria
Total Tags: 99,271
Location: Heart - Atria
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 108,637
Location: Heart - Atria
Stage: Theiler Stage 19
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 106,599
Location: Heart - Atria
Stage: Theiler Stage 14
Protocol: SAGE (LongSAGE 21 bp)
Heart Atrioventricular canal
Total Tags: 106,618
Location: Heart - Atrioventricular canal
Stage: Theiler Stage 15
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 117,715
Location: Heart - Atrioventricular canal
Stage: Theiler Stage 19
Protocol: SAGE (LongSAGE 21 bp)
Heart Bulbus cordis
Total Tags: 107,262
Location: Heart - Bulbus cordis
Stage: Theiler Stage 14
Protocol: SAGE (LongSAGE 21 bp)
Heart Left ventricle
Total Tags: 126,565
Location: Heart - Left ventricle
Stage: Theiler Stage 14
Protocol: SAGE (LongSAGE 21 bp)
Heart Ventricle
Total Tags: 133,781
Location: Heart - Ventricle
Stage: Theiler Stage 19
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 113,289
Location: Heart - Ventricle
Stage: Theiler Stage 20
Protocol: SAGE (SAGE 14 bp)
Heart Whole
Total Tags: 103,667
Location: Heart - Whole
Stage: Theiler Stage 13
Protocol: SAGE (LongSAGE 21 bp)
Kidney Epithelium
Total Tags: 47,861
Location: Kidney - Epithelium
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Kidney Mesenchyme
Total Tags: 113,355
Location: Kidney - Mesenchyme
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Kidney Whole
Total Tags: 121,983
Location: Kidney - Whole
Stage: Theiler Stage 24
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 129,363
Location: Kidney - Whole
Stage: Theiler Stage 27
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 883,488
Location: Kidney - Whole
Stage: 12 weeks post birth
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 108,308
Location: Kidney - Whole
Stage: Theiler Stage 19
Protocol: SAGE (LongSAGE 21 bp)
Large intestine Epithelium
Total Tags: 71,137
Location: Large intestine - Epithelium
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Total Tags: 47,641
Location: Large intestine - Epithelium
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Large intestine Mesenchyme
Total Tags: 105,132
Location: Large intestine - Mesenchyme
Stage: Theiler Stage 20
Protocol: SAGE (LongSAGE 21 bp)
Large intestine Whole
Total Tags: 124,399
Location: Large intestine - Whole
Stage: Theiler Stage 25
Protocol: SAGE (LongSAGE 21 bp)
Limb Forelimb
Total Tags: 124,933
Location: Limb