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Libraries Grouped By Tissue Collection Lab
Lab BCCRC: Cheryl Helgason Lab
The focus of our laboratory is on tissues of the lympho-hematopoietic system, as well as the endocrine and urogenital systems.
| Library Name | Tissue Location | Developmental Stage | Strain | Source Lab | SAGE Protocol | Tags Q99 | Tags Q95 |
|---|---|---|---|---|---|---|---|
| SM036 | Urogenital sinus - Mesenchyme | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 96,112 | 104,141 |
| SM037 | Bladder - Whole | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 113,238 | 121,165 |
| SM041 | Bladder - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 122,198 | 129,165 |
| SM044 | Testis - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 104,806 | 110,547 |
| SM054 | Urogenital sinus - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 93,372 | 99,204 |
| SM055 | Spleen - Whole | Theiler Stage 23 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 104,639 | 110,823 |
| SM057 | Thymus - Whole | Theiler Stage 23 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 88,970 | 95,363 |
| SM059 | Adrenal glands | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 109,295 | 116,017 |
| SM062 | Mammary glands | Post natal day 60 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 109,966 | 116,360 |
| SM065 | Urogenital sinus - Epithelium | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 116,931 | 124,167 |
| SM069 | Mammary glands | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 94,971 | 100,043 |
| SM071 | Mammary glands | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 83,444 | 88,522 |
| SM074 | Mammary glands | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 92,438 | 95,349 |
| SM075 | Uterus - Whole | Post natal day 36 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 87,070 | 90,987 |
| SM076 | Ovaries | Post natal day 36 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 104,111 | 110,339 |
| SM078 | Large intestine - Mesenchyme | Theiler Stage 20 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 80,251 | 86,078 |
| SM079 | Adrenal glands | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 71,624 | 77,156 |
| SM080 | Testis - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 80,563 | 86,695 |
| SM082 | Kidney - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 96,413 | 101,647 |
| SM086 | Kidney - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 93,855 | 100,180 |
| SM091 | Testis - Whole | Post natal day 36 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 85,478 | 91,148 |
| SM093 | Ovaries | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | SAGELite-LongSAGE | 80,167 | 85,206 |
| SM102 | Pancreas - Pancreatic duct | Post natal day 42 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 90,253 | 95,268 |
| SM103 | Pancreas - Regenerating duct | Post natal day 42 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 78,429 | 82,887 |
| SM104 | Kidney - Whole | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 657,654 | 698,724 |
| SM113 | Kidney - Whole | Theiler Stage 19 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 82,555 | 86,307 |
| SM114 | Pancreas - Regenerating islets | Post natal day 42 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 61,041 | 65,137 |
| SM118 | Testis - Whole | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 95,530 | 99,955 |
| SM119 | Skin | Theiler Stage 21 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 39,957 | 41,510 |
| SM120 | Skin | Theiler Stage 21 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 38,111 | 39,977 |
| SM124 | Kidney - Mesenchyme | Theiler Stage 20 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 86,180 | 90,457 |
| SM128 | Testis - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 90,126 | 94,512 |
| SM129 | Mammary glands | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 81,608 | 88,482 |
| SM130 | Lymph nodes - Mesenteric | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 72,033 | 75,571 |
| SM134 | Skin | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 77,326 | 81,688 |
| SM160 | Pancreas - Whole | Theiler Stage 20 | CBA/B6 (n=2 on B6) | BCCRC: Cheryl Helgason Lab | SAGELite-LongSAGE | 80,967 | 84,188 |
| SM161 | Pancreas - Whole | Theiler Stage 17 | CBA/B6 (n=2 on B6) | BCCRC: Cheryl Helgason Lab | SAGELite-LongSAGE | 80,697 | 85,054 |
| SM162 | Pancreas - Whole | Theiler Stage 20 | CBA/B6 (n=2 on B6) | BCCRC: Cheryl Helgason Lab | SAGELite-LongSAGE | 81,439 | 86,042 |
| SM163 | Urogenital sinus - Epithelium | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 115,329 | 118,835 |
| SM164 | Ovaries | Theiler Stage 27 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 88,599 | 92,311 |
| SM169 | Kidney - Epithelium | Theiler Stage 20 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 36,764 | 39,152 |
| SM170 | Urogenital sinus - Mesenchyme | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 87,524 | 91,498 |
| SM171 | Uterus - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 75,695 | 80,043 |
| SM172 | Limb - Forelimb | Theiler Stage 17 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 83,300 | 87,487 |
| SM177 | Limb - Forelimb | Theiler Stage 23 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 79,452 | 83,381 |
| SM214 | Skin | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 87,546 | 91,183 |
| SM218 | Bone | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 46,436 | 50,219 |
| SM219 | Prostate - Dorsal lobe | Post natal day 63 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 78,094 | 80,957 |
| SM220 | Prostate - Dorsal lobe | Post natal day 63 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 44,195 | 46,184 |
| SM221 | Lymph nodes - Lumbar | Post natal day 63 | Mixed | BCCRC: Cheryl Helgason Lab | LongSAGE | 88,646 | 91,999 |
| SM222 | Lymph nodes - Lumbar | Post natal day 63 | Mixed | BCCRC: Cheryl Helgason Lab | LongSAGE | 79,516 | 83,004 |
| SM026 | Prostate - Dorsal lobe | Post natal day 72 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 68,441 | 73,932 |
| SM017 | Pancreas - Islets | Post natal day 70 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 38,269 | 40,755 |
| SM024 | Thymus - Whole | Post natal day 72 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 98,292 | 105,406 |
| SM027 | Bladder - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 59,384 | 63,061 |
| SM014 | Pancreas - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | SAGE | 75,253 | 84,336 |
| SM015 | Pancreas - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | SAGE | 68,565 | 72,113 |
| SM016 | Pancreas - Whole | Theiler Stage 26 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 53,233 | 56,048 |
| SM010 | Spleen - Whole | Theiler Stage 26 | C57BL/6J | BCCRC: Cheryl Helgason Lab | SAGE | 73,747 | 80,639 |
| SM011 | Spleen - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 39,558 | 41,975 |
| SM012 | Spleen - Whole | 12 weeks post birth | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 58,929 | 61,968 |
| SM022 | Thymus - Whole | Theiler Stage 26 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 57,565 | 64,730 |
| SM032 | Urogenital sinus - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 84,647 | 90,628 |
| SM025 | Prostate - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 61,526 | 67,117 |
| SM224 | Pancreas - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 71,380 | 73,970 |
| SM223 | Pancreas - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Cheryl Helgason Lab | LongSAGE | 58,997 | 61,035 |
| SM225 | Pancreas - Whole | Theiler Stage 21 | CBA/B6 (n=2 on B6) | BCCRC: Cheryl Helgason Lab | SAGELite-LongSAGE | 63,341 | 66,354 |
Lab CMMT: Elizabeth Simpson
The Elizabeth M. Simpson Laboratory is focused on the developing brain. This group's role in the Mouse Atlas project is to isolate tissues for SAGE library construction and undertake analysis and validation of the resulting libraries.
| Library Name | Tissue Location | Developmental Stage | Strain | Source Lab | SAGE Protocol | Tags Q99 | Tags Q95 |
|---|---|---|---|---|---|---|---|
| SM040 | Brain - Visual cortex | Post natal day 27 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 107,941 | 114,280 |
| SM073 | Brain - Visual cortex | Post natal day 27 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,320 | 84,084 |
| SM029 | Brain - Visual cortex | Post natal day 27 | C57BL/6J | CMMT: Elizabeth Simpson | LongSAGE | 83,830 | 89,497 |
| SM050 | Brain - Visual cortex | Post natal day 42 | C57BL/6J | CMMT: Elizabeth Simpson | LongSAGE | 89,449 | 93,150 |
| SM052 | Brain - VZ/SVZ ventral telencephalon | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 89,873 | 94,313 |
| SM053 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 92,997 | 98,229 |
| SM056 | Brain - Optic cup | Theiler Stage 17 | C57BL/6J | CMMT: Elizabeth Simpson | LongSAGE | 111,966 | 117,231 |
| SM060 | Brain - Visual cortex | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | LongSAGE | 98,637 | 103,974 |
| SM064 | Brain - Prestriatum | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 124,411 | 130,721 |
| SM067 | Brain - Dorsal telencephalon | Theiler Stage 17 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,035 | 81,347 |
| SM068 | Brain - Ventral telencephalon | Theiler Stage 17 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 72,389 | 78,789 |
| SM070 | Brain - Whole telencephalon | Theiler Stage 15 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 89,381 | 93,864 |
| SM081 | Brain - Whole head | Theiler Stage 13 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 85,312 | 89,319 |
| SM083 | Brain - Future forebrain | Theiler Stage 13 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 90,282 | 94,702 |
| SM087 | Brain - Diencephalon | Theiler Stage 19 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 85,713 | 90,099 |
| SM088 | Brain - Hypothalamus | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 100,576 | 106,323 |
| SM092 | Brain - Epithalamus | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 88,563 | 94,134 |
| SM097 | Brain - Whole | Post natal day 27 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 78,450 | 83,843 |
| SM098 | Brain - Whole | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,635 | 84,188 |
| SM109 | Brain - Dorsal thalamus | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 88,730 | 92,862 |
| SM110 | Brain - Hypothalamus | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 80,798 | 84,996 |
| SM111 | Brain - Whole | Theiler Stage 25 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 75,791 | 80,048 |
| SM121 | Brain - Whole head | Theiler Stage 17 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 94,076 | 99,051 |
| SM122 | Brain - Whole head | Theiler Stage 15 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 84,828 | 88,523 |
| SM131 | Brain - Whole head | Theiler Stage 19 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 83,040 | 87,072 |
| SM132 | Brain - Ventral thalamus | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 78,196 | 82,437 |
| SM137 | Brain - Dentate gyrus, dorsal/anterior | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 74,728 | 77,739 |
| SM138 | Brain - Whole | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 81,307 | 84,381 |
| SM139 | Brain - Medial thalamus | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,495 | 82,199 |
| SM141 | Brain - Whole | Post natal day 7 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,044 | 81,387 |
| SM142 | Brain - Preplate | Theiler Stage 21 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 83,313 | 87,567 |
| SM143 | Brain - Whole | Theiler Stage 20 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 95,346 | 98,051 |
| SM144 | Brain - Dentate gyrus, dorsal/anterior | Post natal day 7 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,012 | 81,502 |
| SM147 | Brain - Visual cortex layers II/III/IV | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 102,407 | 108,175 |
| SM148 | Brain - Striatum | Theiler Stage 25 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 91,753 | 96,332 |
| SM152 | Brain - Substantia nigra | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 94,060 | 98,497 |
| SM153 | Brain - Basal nucleus of meynert | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 92,857 | 97,518 |
| SM154 | Brain - Whole | Theiler Stage 21 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 78,297 | 83,981 |
| SM167 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 21 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 80,618 | 84,450 |
| SM175 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 25 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 68,745 | 71,965 |
| SM178 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 23 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,981 | 85,387 |
| SM179 | Brain - Whole | Theiler Stage 23 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 81,925 | 85,688 |
| SM180 | Brain - Locus coeruleus | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 73,434 | 77,457 |
| SM181 | Brain - Rahpe nuclei | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,509 | 85,075 |
| SM182 | Brain - Cerebellum white matter | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 64,213 | 67,333 |
| SM183 | Brain - Primary motor cortex | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,165 | 82,563 |
| SM184 | Brain - CA1, dorsal/anterior | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 90,458 | 94,391 |
| SM185 | Brain - CA1, dorsal/anterior | Post natal day 7 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,996 | 81,454 |
| SM186 | Brain - CA1, dorsal/anterior | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 74,887 | 78,388 |
| SM187 | Brain - Dentate gyrus, dorsal/anterior | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 75,400 | 78,381 |
| SM188 | Brain - Striatum | Post natal day 7 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,524 | 81,039 |
| SM189 | Brain - Amygdala | Post natal day 7 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 74,291 | 80,887 |
| SM190 | Brain - Amygdala, central nucleus | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 63,332 | 68,197 |
| SM191 | Brain - Striatum | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 73,958 | 77,199 |
| SM192 | Brain - Amygdala, basolateral complex | Post natal day 35 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 70,390 | 74,010 |
| SM193 | Brain - Amygdala, basolateral complex | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 76,009 | 80,622 |
| SM194 | Brain - Amygdala, central nucleus | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 74,109 | 77,758 |
| SM195 | Brain - Striatum | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 69,791 | 73,276 |
| SM196 | Brain - Cerebellum, purkinje cell layer | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 77,296 | 81,434 |
| SM031 | Brain - Visual cortex | Post natal day 20 | C57BL/6J | CMMT: Elizabeth Simpson | LongSAGE | 102,711 | 110,971 |
| SM201 | Brain - Ependymal and subependymal layers | 12 weeks post birth | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 83,026 | 86,730 |
| SM301 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 23 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,038 | 82,693 |
| SM168 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 25 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 74,278 | 77,821 |
| SM197 | Brain - VZ/SVZ dorsal telencephalon | Theiler Stage 21 | C57BL/6J | CMMT: Elizabeth Simpson | SAGELite-LongSAGE | 79,484 | 82,214 |
Lab BCCRC: Pamela Hoodless Lab
The Hoodless laboratory is primarily interested in the early stages of mammalian development, from one cell through to gastrulation, and organogenesis, in particular, focusing on the heart and gut.
| Library Name | Tissue Location | Developmental Stage | Strain | Source Lab | SAGE Protocol | Tags Q99 | Tags Q95 |
|---|---|---|---|---|---|---|---|
| SM018 | Lung - Whole | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 93,907 | 100,658 |
| SM021 | Lung - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 99,416 | 106,501 |
| SM039 | Branchial arch - Branchial arch 1 | Theiler Stage 17 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 109,349 | 117,024 |
| SM042 | Muscle - Skeletal-gastrocnemius | Theiler Stage 25 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 107,009 | 115,712 |
| SM043 | Branchial arch - Branchial arch 1 | Theiler Stage 15 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 79,553 | 82,499 |
| SM045 | Lung - Whole | Theiler Stage 25 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 106,098 | 113,101 |
| SM047 | Placenta - Whole | Theiler Stage 15 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 112,400 | 118,313 |
| SM049 | Placenta - Whole | Theiler Stage 22 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 117,853 | 125,209 |
| SM051 | Heart - Ventricle | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 109,689 | 115,264 |
| SM058 | Embryo - Blastocysts | Blastocyst - Theiler Stage 5 | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGELite-LongSAGE | 68,876 | 73,663 |
| SM061 | Embryo - Morulae | Morula - Theiler Stage 3 | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGELite-LongSAGE | 86,401 | 90,316 |
| SM063 | Placenta - Ectoplacental cone | Theiler Stage 10 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 84,796 | 88,982 |
| SM066 | Lung - Whole | Theiler Stage 26 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 115,679 | 125,011 |
| SM072 | Stomach - Whole | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 86,056 | 91,903 |
| SM077 | Embryo - Fertilized eggs | 1 Cell - Theiler Stage 1 | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGELite-LongSAGE | 86,155 | 90,643 |
| SM084 | Limb - Forelimb | Theiler Stage 22 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 99,182 | 104,314 |
| SM085 | Limb - Forelimb | Theiler Stage 22 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 86,656 | 91,026 |
| SM089 | Stomach - Whole | Theiler Stage 25 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 87,268 | 92,123 |
| SM090 | Embryo - Embryonic | Theiler Stage 10 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 84,333 | 88,875 |
| SM094 | Small intestine - Whole | Theiler Stage 25 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 89,907 | 95,752 |
| SM095 | Small intestine - Mesenchyme | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 91,722 | 95,041 |
| SM096 | Large intestine - Whole | Theiler Stage 25 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 94,939 | 100,712 |
| SM099 | Embryo - Extraembryonic | Theiler Stage 10 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 83,129 | 88,726 |
| SM100 | Liver - Right lobe | 12 weeks post birth | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 62,771 | 66,272 |
| SM105 | Branchial arch - Branchial arch 2 | Theiler Stage 17 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 86,475 | 90,585 |
| SM106 | Embryo - Posterior | Theiler Stage 11 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 81,741 | 86,158 |
| SM107 | Endoderm - Foregut | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 78,529 | 82,360 |
| SM108 | Endoderm - Definitive | Theiler Stage 12 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 82,476 | 86,801 |
| SM112 | Endoderm - Hindgut | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 83,752 | 87,464 |
| SM116 | Embryo - Anterior half | Theiler Stage 11 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 95,261 | 101,572 |
| SM117 | Neural tube - Posterior neuropore | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 74,203 | 78,376 |
| SM125 | Neural tube - Anterior neuropore | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 81,165 | 84,585 |
| SM126 | Neural tube - Whole | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 60,186 | 63,194 |
| SM127 | Lung - Epithelium | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 84,605 | 88,677 |
| SM133 | Pituitary gland - Whole | Theiler Stage 23 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 100,851 | 105,577 |
| SM135 | Lung - Mesenchyme | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 96,624 | 99,197 |
| SM140 | Liver - Right lobe | 12 weeks post birth | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 9,834 | 10,254 |
| SM145 | Heart - Whole | Theiler Stage 13 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 80,718 | 84,342 |
| SM146 | Embryo - Extraembryonic | Theiler Stage 8 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 72,071 | 77,567 |
| SM149 | Liver - Whole | Theiler Stage 26 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 78,816 | 86,317 |
| SM151 | Small intestine - Epithelium | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 40,316 | 42,054 |
| SM159 | Small intestine - Epithelium | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 45,219 | 46,353 |
| SM155 | Large intestine - Epithelium | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 61,619 | 63,343 |
| SM156 | Large intestine - Epithelium | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 43,440 | 44,369 |
| SM157 | Embryo - Embryonic | Theiler Stage 8 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 81,089 | 86,322 |
| SM158 | Liver - Liver bud and septum transversum | Theiler Stage 14 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 92,040 | 97,724 |
| SM165 | Pituitary gland - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 44,335 | 46,164 |
| SM166 | Pituitary gland - Whole | Theiler Stage 27 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 47,437 | 49,642 |
| SM202 | Pituitary gland - Whole | 12 weeks post birth | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 65,725 | 69,146 |
| SM203 | Embryo - Whole | Theiler Stage 7 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 25,727 | 26,650 |
| SM206 | Heart - Atrioventricular canal | Theiler Stage 15 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 81,266 | 84,545 |
| SM208 | Embryonic stem cells - Whole | Embronyonic Stem Cell | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGELite-LongSAGE | 65,058 | 68,257 |
| SM302 | Embryonic stem cells - Whole | Embronyonic Stem Cell | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 29,131 | 30,356 |
| SM401 | Embryonic stem cells - Whole | Embronyonic Stem Cell | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 36,333 | 37,830 |
| SM209 | Esophagus - Whole | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 80,419 | 83,544 |
| SM210 | Esophagus - Whole | Theiler Stage 24 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 79,493 | 82,627 |
| SM002 | Heart - Atria | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 49,927 | 55,216 |
| SM003 | Heart - Ventricle | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGE | 75,170 | 82,877 |
| SM004 | Heart - Atria | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 60,695 | 66,817 |
| SM005 | Heart - Bulbus cordis | Theiler Stage 14 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 77,222 | 81,812 |
| SM006 | Heart - Atria | Theiler Stage 14 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 58,857 | 65,702 |
| SM007 | Heart - Left ventricle | Theiler Stage 14 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 65,321 | 73,865 |
| SM008 | Heart - Atrioventricular canal | Theiler Stage 19 | C57BL/6J | BCCRC: Pamela Hoodless Lab | LongSAGE | 66,768 | 74,276 |
| SM001 | Liver - Whole | Theiler Stage 20 | C57BL/6J | BCCRC: Pamela Hoodless Lab | SAGE | 66,505 | 74,013 |
| SM212 | Lung - Whole | 109 days post birth | C57BL/6NTac | BCCRC: Pamela Hoodless Lab | LongSAGE | 94,092 | 97,993 |