SAGE Library SM241

Same tissue sample as SM008.


Library Name SM241
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Heart - Atrioventricular canal
Sex Unknown
Age E11.5
Developmental Stage Theiler Stage 19
Organsim Condition

Sample Collection

Tissue Dissection Photos

Click to view full-size image…

With the aid of a dissecting microscope hearts were manually removed from embryos submerged in phosphate buffered saline (PBS). The atrio-ventricular canal region was isolated using fine forceps. The region designated atrio-ventricular canal is shown in the organogenic image. As much blood was removed as possible before transfer to Trizol. The atrio-ventricular canals of embryos of several litters were collected to obtain enough RNA for SAGE library construction.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 48

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 6300.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 228,819
Total Raw Tags at Q95 182,345
Total Raw Tags at Q99 172,316
Unique Tags 61,212


Tag Counts at Quality 0.95 cut-off tagcounts_SM241_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM241_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM241_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.