Library Group Views
All Libraries
Tissue Locations and Developmental Stages Chart
Libraries by Tissue Location
Libraries by Developmental Stage
Libraries by Lab
Libraries by SAGE Protocol
 

SAGE Library SM222

Classification

Library Name SM222
Species Mus musculus
Strain Mixed
Mutation PBCrePten(flox/-)
Location Lymph nodes - Lumbar
Sex Male
Age P63
Developmental Stage Post natal day 63
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 120,125
Total Raw Tags at Q95 83,004
Total Raw Tags at Q99 79,516
Unique Tags 40,017

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM222_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM222_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM222_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.