SAGE Library SM222

Classification

Library Name SM222
Species Mus musculus
Strain Mixed
Mutation PBCrePten(flox/-)
Location Lymph nodes - Lumbar
Sex Male
Age P63
Developmental Stage Post natal day 63
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 120,125
Total Raw Tags at Q95 83,004
Total Raw Tags at Q99 79,516
Unique Tags 40,017

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM222_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM222_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM222_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.