SAGE Library SM221

Classification

Library Name SM221
Species Mus musculus
Strain Mixed
Mutation PBCrePten(flox/flox)
Location Lymph nodes - Lumbar
Sex Male
Age P63
Developmental Stage Post natal day 63
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 1.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 112,945
Total Raw Tags at Q95 91,999
Total Raw Tags at Q99 88,646
Unique Tags 35,324

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM221_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM221_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM221_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.