SAGE Library SM210

Classification

Library Name SM210
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Esophagus - Whole
Sex Unknown
Age E16.5
Developmental Stage Theiler Stage 24
Organsim Condition

Sample Collection

Tissue Dissection Photos Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 107,509
Total Raw Tags at Q95 82,627
Total Raw Tags at Q99 79,493
Unique Tags 26,063

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM210_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM210_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM210_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.