SAGE Library SM209


Library Name SM209
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Esophagus - Whole
Sex Unknown
Age E12.5
Developmental Stage Theiler Stage 20
Organsim Condition

Sample Collection

Tissue Dissection Photos Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 104,469
Total Raw Tags at Q95 83,544
Total Raw Tags at Q99 80,419
Unique Tags 24,085


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM209_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM209_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM209_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.