SAGE Library SM188

Classification

Library Name SM188
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Striatum
Sex Male
Age P07
Developmental Stage Post natal day 7
Organsim Condition

Sample Collection

Tissue Dissection Photos

Click to view full-size image…

An intact coronal cryosection of mouse brain at postnatal day 7 stained with cresyl violet. Ctx = cerebral cortex; cc = corpus callosum; Str = striatum; LV = lateral ventricle. Scale bar = 200 µm.


Click to view full-size image…

The striatum was cut with laser. Scale bar = 200 µm.


Click to view full-size image…

The striatum was removed by LCM. Scale bar = 200 µm.


Click to view full-size image…

The striatum was captured by LCM for total RNA extraction. Scale bar = 200 µm.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 100.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 105,204
Total Raw Tags at Q95 81,039
Total Raw Tags at Q99 77,524
Unique Tags 38,851

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM188_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM188_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM188_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.