SAGE Library SM179


Library Name SM179
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Whole
Sex Male
Age E15.5
Developmental Stage Theiler Stage 23
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Mid-dissection – embryo decapitated and brain exposed as skin and skull peeled away

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Dissected whole brain – side view

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Dissected whole brain – top view

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Dissected whole brain – viewed from below

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 100.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 108,082
Total Raw Tags at Q95 85,688
Total Raw Tags at Q99 81,925
Unique Tags 36,841


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM179_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM179_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM179_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.