SAGE Library SM178

Classification

Library Name SM178
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - VZ/SVZ dorsal telencephalon
Sex Male
Age E15.5
Developmental Stage Theiler Stage 23
Organsim Condition

Sample Collection

Lab CMMT: Elizabeth Simpson
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 16.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 117,924
Total Raw Tags at Q95 85,387
Total Raw Tags at Q99 79,981
Unique Tags 35,783

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM178_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM178_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM178_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.