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SAGE Library SM170

Classification

Library Name SM170
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Urogenital sinus - Mesenchyme
Sex Female
Age E16.5
Developmental Stage Theiler Stage 24
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals 47

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 117,267
Total Raw Tags at Q95 91,498
Total Raw Tags at Q99 87,524
Unique Tags 37,581

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM170_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM170_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM170_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.