Classification
| Library Name |
SM169 |
| Species |
Mus musculus |
| Strain |
C57BL/6J |
| Mutation |
Wild Type |
| Location |
Kidney - Epithelium |
| Sex |
Unknown |
| Age |
E12 |
| Developmental Stage |
Theiler Stage 20 |
| Organsim Condition |
|
Sample Collection
| Tissue Dissection Photos |
With the aid of a dissecting microscope, whole kidneys were manually removed from embryos submerged in phosphate buffered saline (PBS). To dissociate the epithelium, kidneys were subsequently placed in 500 uL of 1% trypsin in Hanks solution. After 90 minutes of incubation at 4ÂșC, the digestion was stopped with the addition of 1 mL of 20% fetal bovine serum (FBS) in Hanks solution plus a small amount of DNase I powder. Tungsten needles were used to tease away the epithelium which was collected in tubes containing Trizol. Tissue from several litters was collected to obtain enough RNA for SAGE library construction. No more than two litters were dissected on the same day, with each litter taking about 1hour to manually dissocitate after trypsin digestion.

This work is licensed under a Creative Commons Attribution 2.5 License.
|
| Lab |
BCCRC: Cheryl Helgason Lab |
| Number of Animals |
77
|
Library Construction
| SAGE Protocol |
SAGE (LongSAGE 21 bp) |
| Starting RNA |
1.5 ug |
|
Tag Extraction
| Total Raw Tags (no quality cut-off) |
47,861 |
| Total Raw Tags at Q95 |
39,152 |
| Total Raw Tags at Q99 |
36,764 |
| Unique Tags |
17,692 |
Data
Data Analysis
|
Data is available for analysis using DiscoverySpace,
a cross-platform application that allows comparison between SAGE libraries,
tag to gene mapping and results from public datasources.
|
SAGE Library Help
A full explanation of each of the fields displayed on this page is available on the
SAGE Library Help page.
|