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SAGE Library SM161

Same tissue sample as SM244.

Classification

Library Name SM161
Species Mus musculus
Strain CBA/B6 (n=2 on B6)
Mutation PDX1-GFP Tg
Location Pancreas - PDX1GFP+
Sex Unknown
Age E10.5
Developmental Stage Theiler Stage 17
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 20.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 105,116
Total Raw Tags at Q95 85,054
Total Raw Tags at Q99 80,697
Unique Tags 30,516

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM161_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM161_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM161_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.