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SAGE Library SM160

Same tissue sample as SM243.

Classification

Library Name SM160
Species Mus musculus
Strain CBA/B6 (n=2 on B6)
Mutation NGN3-GFP Tg
Location Pancreas - NGN3GFP+
Sex Unknown
Age E12.5
Developmental Stage Theiler Stage 20
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 20.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 98,201
Total Raw Tags at Q95 84,188
Total Raw Tags at Q99 80,967
Unique Tags 29,959

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM160_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM160_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM160_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.