SAGE Library SM154


Library Name SM154
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Whole
Sex Male
Age E13.5
Developmental Stage Theiler Stage 21
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Dissected whole brain.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 100.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 104,460
Total Raw Tags at Q95 83,981
Total Raw Tags at Q99 78,297
Unique Tags 31,646


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM154_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM154_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM154_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.