SAGE Library SM152

Classification

Library Name SM152
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Substantia nigra
Sex Male
Age P84-P90
Developmental Stage 12 weeks post birth
Organsim Condition

Sample Collection

Tissue Dissection Photos Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals 3

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 20.16 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 117,651
Total Raw Tags at Q95 98,497
Total Raw Tags at Q99 94,060
Unique Tags 31,766

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM152_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM152_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM152_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.