SAGE Library SM147

Classification

Library Name SM147
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Visual cortex layers II/III/IV
Sex Male
Age P84-P90
Developmental Stage 12 weeks post birth
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Dhc = dorsal hippocampal commisure, S = subiculum, cg = cingulum

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals 2

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 20.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 136,072
Total Raw Tags at Q95 108,175
Total Raw Tags at Q99 102,407
Unique Tags 41,990

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM147_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM147_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM147_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.