SAGE Library SM146


Library Name SM146
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Embryo - Extraembryonic
Sex Unknown
Age E6.5
Developmental Stage Theiler Stage 8
Organsim Condition

Sample Collection

Tissue Dissection Photos Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 92,727
Total Raw Tags at Q95 77,567
Total Raw Tags at Q99 72,071
Unique Tags 25,028


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM146_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM146_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM146_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.