SAGE Library SM121


Library Name SM121
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Whole head
Sex Male
Age E10.5
Developmental Stage Theiler Stage 17
Organsim Condition

Sample Collection

Tissue Dissection Photos

Click to view full-size image…

Dissected whole head, cut off just below the otic vesicle, encompases forebrain, midbrain and hindbrain.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals Not Available

Library Construction

SAGE Protocol SAGELite (LongSAGE 21 bp)
Starting RNA 100.0 ng

Tag Extraction

Total Raw Tags (no quality cut-off) 126,815
Total Raw Tags at Q95 99,051
Total Raw Tags at Q99 94,076
Unique Tags 36,877


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM121_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM121_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM121_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.