SAGE Library SM116

Classification

Library Name SM116
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Embryo - Anterior half
Sex Unknown
Age E7.5
Developmental Stage Theiler Stage 11
Organsim Condition

Sample Collection

Tissue Dissection Photos

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With the aid of a dissecting microscope deciduas were teased apart under phosphate buffered saline (PBS) to expose embryos. The extraembryonic region (as defined in the organogenic image) was severed from the rest of the embryos using either mini-Vannas scissors or fine forceps. The embryonic region then was splited into anterior half and posterior half as depicted in the image. The anterior halves of the embryos were then collected into Trizol.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 230

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 123,179
Total Raw Tags at Q95 101,572
Total Raw Tags at Q99 95,261
Unique Tags 36,300

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM116_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM116_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM116_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.