SAGE Library SM113

Classification

Library Name SM113
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Kidney - Whole
Sex Unknown
Age E11.5
Developmental Stage Theiler Stage 19
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Whole kidneys were manualyl dissected and placed in Trizol. Multiple litters were used to extract RNA.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Cheryl Helgason Lab
Number of Animals Not Available

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 2.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 108,308
Total Raw Tags at Q95 86,307
Total Raw Tags at Q99 82,555
Unique Tags 32,721

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM113_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM113_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM113_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.