SAGE Library SM065

Classification

Library Name	SM065
Species	Mus musculus
Strain	C57BL/6J
Mutation	Wild Type
Location	Urogenital sinus - Epithelium
Sex	Male
Age	E16.5
Developmental Stage	Theiler Stage 24
Organsim Condition

Sample Collection

Tissue Dissection Photos	Click to view full-size image… Click to view full-size image… Urogenital sinus and urethra, labeled. Click to view full-size image… Urogenital sinus and urethra, unlabeled. Click to view full-size image… Urogenital sinus, urethra, bladder and testis, labeled. Click to view full-size image… Urogenital sinus, urethra, bladder and testis, unlabeled. This work is licensed under a Creative Commons Attribution 2.5 License.
Lab	BCCRC: Cheryl Helgason Lab
Number of Animals	44

Library Construction

SAGE Protocol	SAGE (LongSAGE 21 bp)
Starting RNA	10.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off)	143,720
Total Raw Tags at Q95	124,167
Total Raw Tags at Q99	116,931
Unique Tags	35,716

Data

Library Metadata	Library Metadata XML
Tag Counts at Quality 0.95 cut-off	tagcounts_SM065_Q95.txt
Tag Counts at Quality 0.99 cut-off	tagcounts_SM065_Q99.txt
Clustered Tag Counts and P-Value	tagclustered_SM065_Q99.txt

Data Analysis

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.

Mouse Atlas of Gene Expression

Sections