SAGE Library SM057

Classification

Library Name SM057
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Thymus - Whole
Sex Unknown
Age E15.5
Developmental Stage Theiler Stage 23
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Thymus in body, labeled.


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Thymus in body, unlabeled.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Cheryl Helgason Lab
Number of Animals 32

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 15.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 110,072
Total Raw Tags at Q95 95,363
Total Raw Tags at Q99 88,970
Unique Tags 31,595

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM057_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM057_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM057_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.