SAGE Library SM056

Classification

Library Name	SM056
Species	Mus musculus
Strain	C57BL/6J
Mutation	Wild Type
Location	Brain - Optic cup
Sex	Unknown
Age	E10.5
Developmental Stage	Theiler Stage 17
Organsim Condition

Sample Collection

Tissue Dissection Photos	Click to view full-size image… Head with eye region. Click to view full-size image… Head region with tissue collected area indicated. Click to view full-size image… Dissected tissue illuminated from above. Click to view full-size image… Dissected tissue illuminated from below. This work is licensed under a Creative Commons Attribution 2.5 License.
Lab	CMMT: Elizabeth Simpson
Number of Animals	14

Library Construction

SAGE Protocol	SAGE (LongSAGE 21 bp)
Starting RNA	4.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off)	138,115
Total Raw Tags at Q95	117,231
Total Raw Tags at Q99	111,966
Unique Tags	38,650

Data

Library Metadata	Library Metadata XML
Tag Counts at Quality 0.95 cut-off	tagcounts_SM056_Q95.txt
Tag Counts at Quality 0.99 cut-off	tagcounts_SM056_Q99.txt
Clustered Tag Counts and P-Value	tagclustered_SM056_Q99.txt

Data Analysis

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.

Mouse Atlas of Gene Expression

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