SAGE Library SM056


Library Name SM056
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Brain - Optic cup
Sex Unknown
Age E10.5
Developmental Stage Theiler Stage 17
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Head region with tissue collected area indicated.

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Dissected tissue illuminated from above.

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Dissected tissue illuminated from below.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab CMMT: Elizabeth Simpson
Number of Animals 14

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 4.5 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 138,115
Total Raw Tags at Q95 117,231
Total Raw Tags at Q99 111,966
Unique Tags 38,650


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM056_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM056_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM056_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.