SAGE Library SM054

Classification

Library Name SM054
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Urogenital sinus - Whole
Sex Female
Age E16.5
Developmental Stage Theiler Stage 24
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Urogenital sinus and urethra, labeled.


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Urogenital sinus and urethra, unlabeled.


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Urogenital sinus, urethra, bladder and ovary, labeled.


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Urogenital sinus, urethra, bladder and ovary, unlabeled.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Cheryl Helgason Lab
Number of Animals 30

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 10.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 114,248
Total Raw Tags at Q95 99,204
Total Raw Tags at Q99 93,372
Unique Tags 35,405

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM054_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM054_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM054_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.