SAGE Library SM049

Classification

Library Name	SM049
Species	Mus musculus
Strain	C57BL/6J
Mutation	Wild Type
Location	Placenta - Whole
Sex	Unknown
Age	E14
Developmental Stage	Theiler Stage 22
Organsim Condition

Sample Collection

Tissue Dissection Photos	Click to view full-size image… Front side view of the placenta at theiler stage 22. Click to view full-size image… Back side view of the placenta at theiler stage 22. This work is licensed under a Creative Commons Attribution 2.5 License.
Lab	BCCRC: Pamela Hoodless Lab
Number of Animals	4

Library Construction

SAGE Protocol	SAGE (LongSAGE 21 bp)
Starting RNA	22.4 ug

Tag Extraction

Total Raw Tags (no quality cut-off)	154,761
Total Raw Tags at Q95	125,209
Total Raw Tags at Q99	117,853
Unique Tags	33,853

Data

Library Metadata	Library Metadata XML
Tag Counts at Quality 0.95 cut-off	tagcounts_SM049_Q95.txt
Tag Counts at Quality 0.99 cut-off	tagcounts_SM049_Q99.txt
Clustered Tag Counts and P-Value	tagclustered_SM049_Q99.txt

Data Analysis

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.

Mouse Atlas of Gene Expression

Sections