SAGE Library SM043


Library Name SM043
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Branchial arch - Branchial arch 1
Sex Unknown
Age E9.5
Developmental Stage Theiler Stage 15
Organsim Condition

Sample Collection

Tissue Dissection Photos

Click to view full-size image…

left branchial arch 1 removed

Click to view full-size image…

left branchial arch 2 removed

Click to view full-size image…

Close-up of the head region of the mouse embryo at E9.5

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 50

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 5.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 91,534
Total Raw Tags at Q95 82,499
Total Raw Tags at Q99 79,553
Unique Tags 25,379


Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM043_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM043_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM043_Q99.txt

Data Analysis


Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.