SAGE Library SM041

Classification

Library Name SM041
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Bladder - Whole
Sex Unknown
Age E14.5
Developmental Stage Theiler Stage 22
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals 20

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 5.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 150,305
Total Raw Tags at Q95 129,165
Total Raw Tags at Q99 122,198
Unique Tags 40,373

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM041_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM041_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM041_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.