SAGE Library SM036

Classification

Library Name	SM036
Species	Mus musculus
Strain	C57BL/6J
Mutation	Wild Type
Location	Urogenital sinus - Mesenchyme
Sex	Male
Age	E16.5
Developmental Stage	Theiler Stage 24
Organsim Condition

Sample Collection

Tissue Dissection Photos	Click to view full-size image… Click to view full-size image… Urogenital sinus and urethra, labeled. Click to view full-size image… Urogenital sinus and urethra, unlabeled. Click to view full-size image… Urogenital sinus, urethra, bladder and testis, labeled. Click to view full-size image… Urogenital sinus, urethra, bladder and testis, unlabeled. This work is licensed under a Creative Commons Attribution 2.5 License.
Lab	BCCRC: Cheryl Helgason Lab
Number of Animals	44

Library Construction

SAGE Protocol	SAGE (LongSAGE 21 bp)
Starting RNA	5.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off)	124,928
Total Raw Tags at Q95	104,141
Total Raw Tags at Q99	96,112
Unique Tags	40,113

Data

Library Metadata	Library Metadata XML
Tag Counts at Quality 0.95 cut-off	tagcounts_SM036_Q95.txt
Tag Counts at Quality 0.99 cut-off	tagcounts_SM036_Q99.txt
Clustered Tag Counts and P-Value	tagclustered_SM036_Q99.txt

Data Analysis

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.

Mouse Atlas of Gene Expression

Sections