SAGE Library SM024

Classification

Library Name SM024
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Thymus - Whole
Sex Unknown
Age P72
Developmental Stage Post natal day 72
Organsim Condition

Sample Collection

Lab BCCRC: Cheryl Helgason Lab
Number of Animals 3

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 5.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 129,506
Total Raw Tags at Q95 105,406
Total Raw Tags at Q99 98,292
Unique Tags 38,089

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM024_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM024_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM024_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.