SAGE Library SM022

Classification

Library Name SM022
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Thymus - Whole
Sex Unknown
Age E18.5
Developmental Stage Theiler Stage 26
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Thymus in embryo, labeled.


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Thymus in embryo, unlabeled.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Cheryl Helgason Lab
Number of Animals 9

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 19.1 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 106,684
Total Raw Tags at Q95 64,730
Total Raw Tags at Q99 57,565
Unique Tags 38,381

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM022_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM022_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM022_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.