SAGE Library SM018

Classification

Library Name SM018
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Lung - Whole
Sex Unknown
Age E11.5
Developmental Stage Theiler Stage 19
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Manual dissection. Some external bronchial tissue and adhering mesenchyme included in tissue submitted for library preparation.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 15

Library Construction

SAGE Protocol SAGE (LongSAGE 21 bp)
Starting RNA 5.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 145,468
Total Raw Tags at Q95 100,658
Total Raw Tags at Q99 93,907
Unique Tags 35,097

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM018_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM018_Q99.txt
Clustered Tag Counts and P-Value tagclustered_SM018_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.