SAGE Library SM010

Classification

Library Name	SM010
Species	Mus musculus
Strain	C57BL/6J
Mutation	Wild Type
Location	Spleen - Whole
Sex	Unknown
Age	E18.5
Developmental Stage	Theiler Stage 26
Organsim Condition

Sample Collection

Tissue Dissection Photos	Click to view full-size image… Click to view full-size image… Spleen in embryo, labeled. Click to view full-size image… Spleen in embryo, unlabeled. This work is licensed under a Creative Commons Attribution 2.5 License.
Lab	BCCRC: Cheryl Helgason Lab
Number of Animals	10

Library Construction

SAGE Protocol	SAGE (SAGE 14 bp)
Starting RNA	21.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off)	113,651
Total Raw Tags at Q95	80,639
Total Raw Tags at Q99	73,747
Unique Tags	27,922

Data

Library Metadata	Library Metadata XML
Tag Counts at Quality 0.95 cut-off	tagcounts_SM010_Q95.txt
Tag Counts at Quality 0.99 cut-off	tagcounts_SM010_Q99.txt

Data Analysis

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.

Mouse Atlas of Gene Expression

Sections