SAGE Library SM003

Classification

Library Name SM003
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Heart - Ventricle
Sex Unknown
Age E12
Developmental Stage Theiler Stage 20
Organsim Condition

Sample Collection

Tissue Dissection Photos

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With the aid of a dissecting microscope hearts were manually removed from embryos submerged in phosphate buffered saline (PBS). The ventricles were isolated using mini-Vannas scissors or fine forceps. The ventricle region is shown in the organogenic image. The outflow tract was removed from the ventricular tissue. As much blood was removed as possible from the ventricles before transfer to Trizol. The left and right ventricles from 10 embryos of several liters was collected to obtain enough RNA for SAGE library construction.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 10

Library Construction

SAGE Protocol SAGE (SAGE 14 bp)
Starting RNA 11.9 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 113,289
Total Raw Tags at Q95 82,877
Total Raw Tags at Q99 75,170
Unique Tags 25,250

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM003_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM003_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.