SAGE Library SM001

Classification

Library Name SM001
Species Mus musculus
Strain C57BL/6J
Mutation Wild Type
Location Liver - Whole
Sex Unknown
Age E12
Developmental Stage Theiler Stage 20
Organsim Condition

Sample Collection

Tissue Dissection Photos

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Liver, dorsal view. With the aid of a dissecting microscope the liver was manually removed from embryos submerged in phosphate buffered saline (PBS). The livers were then transferred to Trizol. Livers of embyros of several litters were collected to obtain enough RNA for SAGE library construction.

Creative Commons License
This work is licensed under a Creative Commons Attribution 2.5 License.
Lab BCCRC: Pamela Hoodless Lab
Number of Animals 17

Library Construction

SAGE Protocol SAGE (SAGE 14 bp)
Starting RNA 52.0 ug

Tag Extraction

Total Raw Tags (no quality cut-off) 115,973
Total Raw Tags at Q95 74,013
Total Raw Tags at Q99 66,505
Unique Tags 24,069

Data

Library Metadata Library Metadata XML
Tag Counts at Quality 0.95 cut-off tagcounts_SM001_Q95.txt
Tag Counts at Quality 0.99 cut-off tagcounts_SM001_Q99.txt

Data Analysis

DiscoverySpace

Data is available for analysis using DiscoverySpace, a cross-platform application that allows comparison between SAGE libraries, tag to gene mapping and results from public datasources.

SAGE Library Help

A full explanation of each of the fields displayed on this page is available on the SAGE Library Help page.